van der Hooft, J. J., Mohimani, H., Bauermeister, A., Dorrestein, P. C., Duncan, K. R.*, Medema, M. H.* (2020) Linking Genomics and Metabolomics to Chart Specialized Metabolite Discovery. Chem. Soc. Rev., 2020,49, 3297-3314 [*co-corresponding author]
https://doi.org/10.1039/D0CS00162G
Prudence, S. M. M., Addington, E. , Castaño-Espriu, L., Mark, D. R., Pintor-Escobar, L., Russell, A. H., McLean T. C. Advances in Actinomycete Research: an Actinobase Review of 2019. Microbiology. https://doi.org/10.1099/mic.0.000944
Eldjarn, G. Ramsay, A. van der Hooft, JJJ. Duncan, K. R. Soldatou, S. Rousu, J. Rogers, S*. (2020). Ranking Microbial Metabolomic and Genomic Links Using Correlation-Based and Feature-Based Scoring Functions. [* Corresponding author]. [bioRxiv preprint]. https://doi.org/10.1101/2020.06.12.148205
Millán-Aguiñaga, N. Soldatou, S., Brozio, S., Munnoch, J. T., Howe, J., Hoskisson, P. A., Duncan, K. R*. (2019) Awakening Ancient Polar Actinobacteria: Diversity, Evolution and Specialized Metabolite Potential. [* Corresponding author]. Microbiology. 165(1), 1169-1180, https://doi.org/10.1099/mic.0.000845
Soltatou, S.+, Eldjarn, G. H.+, Huerta-Uribe, A.+, Rogers, S., Duncan, K. R.* (2019) Linking Biosynthetic and Chemical Space to Accelerate Microbial Secondary Metabolite Discovery. [+ Co-first author and * corresponding author]. FEMS Microbiology Letters. 366(13), fnz142. doi:10.1093/femsle/fnz142
Hicks, N. R.*+, Liu, X., Gregory, R., Kenny, J. Lucaci, A., Lenzi, L., Paterson, D. M., Duncan, K. R.*+ (2018) Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Costal Sediments. [+ Co-first author and * Co-corresponding author]. Frontiers in Microbiology. doi: https://doi.org/10.3389/fmicb.2018.01730
Vallet, M., Vanbellingen, Q. P. Fu, T., Le Caer, J-P, Della-Negra, S., Touboul, D., Duncan, K. R., Nay, B., Brunelle, A. and Prado, S. (2017) An integrative approach to decipher the chemical antagonism between the competing endophytes Paraconiothyrium variabile and Bacillus subtilis. Journal of Natural Products doi:10.1021/acs.jnatprod.6b01185
Wang, M., Carver, J. J., Phelan, V. V., Sanchez, L. M., Garg, N., Peng, Y., Nguyen, D. D., Watrous, J., Kapono, C. A., Luzzatto-Knaan, T., Porto, C., Bouslimani, A., Melnik, A. V., Meehan, M. J., Liu, W-T., Crüseman, M., Boudreau, P. D., Esquenazi, E., Sandoval-Calderón, M., Kersten, R. D., Pace, L. A., Quinn, R. A., Duncan, K. R., Hsu, C-C., Floros, D. J., Gavilan, R. G., Kleigrewe, K., Northen, T., Dutton, R. J., Parrot, D., Carlson, E. E., Aigle, B., Michelsen, C. F., Jelsbak, L., Sohlenkamp, C., Pevzner, P., Edlund, A., McLean, J., Piel, J., Murphy, B. T., Gerwick, L., Liaw, C-C., Yang, Y-L., Humpf, H-U., Maansson, M., Keyzers, R. A., Sims, A. C., Johnson, A. R., Sidebottom, A. M., Sedio, B. E., Klitgaard, A., Larson, C. B., Boya P, C. A., Torres-Mendoza, D., Gonzalez, D. J., Silva, D. B., Marques, L. M., Demarque, D. P., Pociute, E., O'Neill, E. C., Briand, E., Helfrich, E. J. N., Granatosky, E. A., Glukhov, E., Ryffel, F., Houson, H., Mohimani, H., Kharbush, J. J., Zeng, Y., Vorholt, J. A., Kurita, K. L., Charusanti, P., McPhail, K. L., Nielsen, K. F., Vuong, L., Elfeki, M., Traxler, M. F., Engene, N., Koyama, N., Vining, O. B., Baric, R., Silva, R. S., Mascuch, S. J., Tomasi, S., Jenkins, S., Macherla, V., Hoffman, T., Agarwal, V., Williams, P. G., Dai, J., Neupane, R., Gurr, J., Rodríguez, A. M. C., Lamsa, A., Zhang, C., Dorrestein, K., Duggan, B. M., Almaliti, J., Allard, P, M., Phapale, P., Nothias, L. F., Alexandrov, T., Litaudon, M., Wolfender, J. L., Kyle, J. E., Metz, T. O., Peryea, T., Nguyen, D-T., VanLeer, D., Shinn, P., Jadhav, A., Müller, R., Waters, K. M., Shi, W., Liu, X., Zhang, L., Knight, R., Jensen, P. R., Palsson, B. O., Pogliano, K., Linington, R. G., Gutiérrez, M., Lopes, N. P., Gerwick, W. H., Moore, B. S., Dorrestein, P. C. Bandeira, N. (2016) Sharing and community curation of mass spectra by GNPS. Nature Biotechnology 34, 828–837. doi:10.1038/nbt.3597
Buchholtz, H. and Duncan, K. R.* (2016) Antarctic Sponge Associated Microbial Chemistry with Biomedical Relevance – the Need for Ecologically Driven Studies. [*Corresponding author] August 2016. Curr. Org. Chem. 21(5): 395-401 doi:10.2174/1385272820666161020122153
Purves, K., MacIntyre, L., Brennan, D., Hreggviosson, G. O., Kuttner, E., Asgeirsdottir, M. E., Young, L. C., Green, D.H. Edrada-Ebel, R, Duncan, K.R.* (2016) Using Molecular Networking for Microbial Secondary Metabolite Bioprospecting. Metabolites 6(1): 2. [*Corresponding author] doi:10.3390/metabo6010002
Duncan, K.R., Crüsemann, M., Lechner, A., Sarkar, A., Li, J., Ziemert, N., Wang, M., Moore, B.S., Dorrestein, P.C. and Jensen, P.R. (2015) Molecular Network and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species. Chem. & Biol. 22: 1-12. http://dx.doi.org/10.1016/j.chembiol.2015.03.010
Patin, N.V., Duncan, K.R., Jensen, P. R. (2015) Competitive Strategies Differentiate Closely-Related Species of Marine Bacteria. ISME J. 10(2): 478-490 doi.org/10.1038/ismej.2015.128
Duncan, K., Haltli, B., Gill, K.A. and Kerr R.G. (2014) Bioprospecing from Marine Sediments of New Brunswick, Canada: Exploring the Relationship Between Total Bacterial Diversity and Actinobacteria Diversity. Mar. Drugs, 12, 899-925; doi:10.3390/md12020899
Duncan, K.R., Haltli, B., Gill, K.A., Correa, H., Berrué, F. and Kerr, R.G. (2014) Exploring the Diversity and Metabolic Potential of Actinomycetes from Temperate Marine Sediments from Newfoundland, Canada. J. Ind. Microbiol. Biotech 42(1): 57-72 doi:10.1007/s10295-014-1529x
Weitz, M., Duncan, K., Pattin, N.V., and Jensen, P.R. (2013) Antagonistic Interactions Mediated by Marine Bacteria, the Role of Small Molecules. J. Chem. Ecol. 39(7): 879-891 doi:10.1007/s10886-013-0316-x
Forner, D., Berrue, F., Correa, H., Duncan, K., Kerr, R.G. (2013) Chemical Dereplication of Marine Actinomycetes by Liquid Chromatography - High Resolution Mass Spectrometry Profiling and Statistical Analysis Anal. Chim. Acta. 12(805): 70-79 doi:10.1016/j.aca.2013.10.029
https://doi.org/10.1039/D0CS00162G
Prudence, S. M. M., Addington, E. , Castaño-Espriu, L., Mark, D. R., Pintor-Escobar, L., Russell, A. H., McLean T. C. Advances in Actinomycete Research: an Actinobase Review of 2019. Microbiology. https://doi.org/10.1099/mic.0.000944
Eldjarn, G. Ramsay, A. van der Hooft, JJJ. Duncan, K. R. Soldatou, S. Rousu, J. Rogers, S*. (2020). Ranking Microbial Metabolomic and Genomic Links Using Correlation-Based and Feature-Based Scoring Functions. [* Corresponding author]. [bioRxiv preprint]. https://doi.org/10.1101/2020.06.12.148205
Millán-Aguiñaga, N. Soldatou, S., Brozio, S., Munnoch, J. T., Howe, J., Hoskisson, P. A., Duncan, K. R*. (2019) Awakening Ancient Polar Actinobacteria: Diversity, Evolution and Specialized Metabolite Potential. [* Corresponding author]. Microbiology. 165(1), 1169-1180, https://doi.org/10.1099/mic.0.000845
Soltatou, S.+, Eldjarn, G. H.+, Huerta-Uribe, A.+, Rogers, S., Duncan, K. R.* (2019) Linking Biosynthetic and Chemical Space to Accelerate Microbial Secondary Metabolite Discovery. [+ Co-first author and * corresponding author]. FEMS Microbiology Letters. 366(13), fnz142. doi:10.1093/femsle/fnz142
Hicks, N. R.*+, Liu, X., Gregory, R., Kenny, J. Lucaci, A., Lenzi, L., Paterson, D. M., Duncan, K. R.*+ (2018) Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Costal Sediments. [+ Co-first author and * Co-corresponding author]. Frontiers in Microbiology. doi: https://doi.org/10.3389/fmicb.2018.01730
Vallet, M., Vanbellingen, Q. P. Fu, T., Le Caer, J-P, Della-Negra, S., Touboul, D., Duncan, K. R., Nay, B., Brunelle, A. and Prado, S. (2017) An integrative approach to decipher the chemical antagonism between the competing endophytes Paraconiothyrium variabile and Bacillus subtilis. Journal of Natural Products doi:10.1021/acs.jnatprod.6b01185
Wang, M., Carver, J. J., Phelan, V. V., Sanchez, L. M., Garg, N., Peng, Y., Nguyen, D. D., Watrous, J., Kapono, C. A., Luzzatto-Knaan, T., Porto, C., Bouslimani, A., Melnik, A. V., Meehan, M. J., Liu, W-T., Crüseman, M., Boudreau, P. D., Esquenazi, E., Sandoval-Calderón, M., Kersten, R. D., Pace, L. A., Quinn, R. A., Duncan, K. R., Hsu, C-C., Floros, D. J., Gavilan, R. G., Kleigrewe, K., Northen, T., Dutton, R. J., Parrot, D., Carlson, E. E., Aigle, B., Michelsen, C. F., Jelsbak, L., Sohlenkamp, C., Pevzner, P., Edlund, A., McLean, J., Piel, J., Murphy, B. T., Gerwick, L., Liaw, C-C., Yang, Y-L., Humpf, H-U., Maansson, M., Keyzers, R. A., Sims, A. C., Johnson, A. R., Sidebottom, A. M., Sedio, B. E., Klitgaard, A., Larson, C. B., Boya P, C. A., Torres-Mendoza, D., Gonzalez, D. J., Silva, D. B., Marques, L. M., Demarque, D. P., Pociute, E., O'Neill, E. C., Briand, E., Helfrich, E. J. N., Granatosky, E. A., Glukhov, E., Ryffel, F., Houson, H., Mohimani, H., Kharbush, J. J., Zeng, Y., Vorholt, J. A., Kurita, K. L., Charusanti, P., McPhail, K. L., Nielsen, K. F., Vuong, L., Elfeki, M., Traxler, M. F., Engene, N., Koyama, N., Vining, O. B., Baric, R., Silva, R. S., Mascuch, S. J., Tomasi, S., Jenkins, S., Macherla, V., Hoffman, T., Agarwal, V., Williams, P. G., Dai, J., Neupane, R., Gurr, J., Rodríguez, A. M. C., Lamsa, A., Zhang, C., Dorrestein, K., Duggan, B. M., Almaliti, J., Allard, P, M., Phapale, P., Nothias, L. F., Alexandrov, T., Litaudon, M., Wolfender, J. L., Kyle, J. E., Metz, T. O., Peryea, T., Nguyen, D-T., VanLeer, D., Shinn, P., Jadhav, A., Müller, R., Waters, K. M., Shi, W., Liu, X., Zhang, L., Knight, R., Jensen, P. R., Palsson, B. O., Pogliano, K., Linington, R. G., Gutiérrez, M., Lopes, N. P., Gerwick, W. H., Moore, B. S., Dorrestein, P. C. Bandeira, N. (2016) Sharing and community curation of mass spectra by GNPS. Nature Biotechnology 34, 828–837. doi:10.1038/nbt.3597
Buchholtz, H. and Duncan, K. R.* (2016) Antarctic Sponge Associated Microbial Chemistry with Biomedical Relevance – the Need for Ecologically Driven Studies. [*Corresponding author] August 2016. Curr. Org. Chem. 21(5): 395-401 doi:10.2174/1385272820666161020122153
Purves, K., MacIntyre, L., Brennan, D., Hreggviosson, G. O., Kuttner, E., Asgeirsdottir, M. E., Young, L. C., Green, D.H. Edrada-Ebel, R, Duncan, K.R.* (2016) Using Molecular Networking for Microbial Secondary Metabolite Bioprospecting. Metabolites 6(1): 2. [*Corresponding author] doi:10.3390/metabo6010002
Duncan, K.R., Crüsemann, M., Lechner, A., Sarkar, A., Li, J., Ziemert, N., Wang, M., Moore, B.S., Dorrestein, P.C. and Jensen, P.R. (2015) Molecular Network and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species. Chem. & Biol. 22: 1-12. http://dx.doi.org/10.1016/j.chembiol.2015.03.010
Patin, N.V., Duncan, K.R., Jensen, P. R. (2015) Competitive Strategies Differentiate Closely-Related Species of Marine Bacteria. ISME J. 10(2): 478-490 doi.org/10.1038/ismej.2015.128
Duncan, K., Haltli, B., Gill, K.A. and Kerr R.G. (2014) Bioprospecing from Marine Sediments of New Brunswick, Canada: Exploring the Relationship Between Total Bacterial Diversity and Actinobacteria Diversity. Mar. Drugs, 12, 899-925; doi:10.3390/md12020899
Duncan, K.R., Haltli, B., Gill, K.A., Correa, H., Berrué, F. and Kerr, R.G. (2014) Exploring the Diversity and Metabolic Potential of Actinomycetes from Temperate Marine Sediments from Newfoundland, Canada. J. Ind. Microbiol. Biotech 42(1): 57-72 doi:10.1007/s10295-014-1529x
Weitz, M., Duncan, K., Pattin, N.V., and Jensen, P.R. (2013) Antagonistic Interactions Mediated by Marine Bacteria, the Role of Small Molecules. J. Chem. Ecol. 39(7): 879-891 doi:10.1007/s10886-013-0316-x
Forner, D., Berrue, F., Correa, H., Duncan, K., Kerr, R.G. (2013) Chemical Dereplication of Marine Actinomycetes by Liquid Chromatography - High Resolution Mass Spectrometry Profiling and Statistical Analysis Anal. Chim. Acta. 12(805): 70-79 doi:10.1016/j.aca.2013.10.029